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  • 1.
    Angelova, Milena
    et al.
    Technical University of Sofia-branch Plovdiv, BUL.
    Vishnu Manasa, Devagiri
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Linde, Peter
    Blekinge Institute of Technology, The Library.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    An Expertise Recommender System Based on Data from an Institutional Repository (DiVA)2018In: Proceedings of the 22nd edition of the International Conference on ELectronic PUBlishing, 2018Conference paper (Refereed)
    Abstract [en]

    Finding experts in academics is an important practical problem, e.g. recruiting reviewersfor reviewing conference, journal or project submissions, partner matching for researchproposals, finding relevant M. Sc. or Ph. D. supervisors etc. In this work, we discuss anexpertise recommender system that is built on data extracted from the Blekinge Instituteof Technology (BTH) instance of the institutional repository system DiVA (DigitalScientific Archive). DiVA is a publication and archiving platform for research publicationsand student essays used by 46 publicly funded universities and authorities in Sweden andthe rest of the Nordic countries (www.diva-portal.org). The DiVA classification system isbased on the Swedish Higher Education Authority (UKÄ) and the Statistic Sweden's (SCB)three levels classification system. Using the classification terms associated with studentM. Sc. and B. Sc. theses published in the DiVA platform, we have developed a prototypesystem which can be used to identify and recommend subject thesis supervisors inacademy.

  • 2.
    Angelova, Milena
    et al.
    Technical University of sofia, BUL.
    Vishnu Manasa, Devagiri
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Linde, Peter
    Blekinge Institute of Technology, The Library.
    Lavesson, Niklas
    An Expertise Recommender System based on Data from an Institutional Repository (DiVA)2019In: Connecting the Knowledge Common from Projects to sustainable Infrastructure: The 22nd International conference on Electronic Publishing - Revised Selected Papers / [ed] Leslie Chan, Pierre Mounier, OpenEdition Press , 2019, p. 135-149Chapter in book (Refereed)
    Abstract [en]

    Finding experts in academics is an important practical problem, e.g. recruiting reviewersfor reviewing conference, journal or project submissions, partner matching for researchproposals, finding relevant M. Sc. or Ph. D. supervisors etc. In this work, we discuss anexpertise recommender system that is built on data extracted from the Blekinge Instituteof Technology (BTH) instance of the institutional repository system DiVA (DigitalScientific Archive). DiVA is a publication and archiving platform for research publicationsand student essays used by 46 publicly funded universities and authorities in Sweden andthe rest of the Nordic countries (www.diva-portal.org). The DiVA classification system isbased on the Swedish Higher Education Authority (UKÄ) and the Statistic Sweden's (SCB)three levels classification system. Using the classification terms associated with studentM. Sc. and B. Sc. theses published in the DiVA platform, we have developed a prototypesystem which can be used to identify and recommend subject thesis supervisors in academy.

  • 3.
    Boeva, Veselka
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Angelova, Milena
    Technical University Sofia, BUL.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Rosander, Oliver
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Tsiporkova, Elena
    Collective Center for the Belgian Technological Industry, BEL.
    Evolutionary clustering techniques for expertise mining scenarios2018In: ICAART 2018 - Proceedings of the 10th International Conference on Agents and Artificial Intelligence, Volume 2 / [ed] van den Herik J.,Rocha A.P., SciTePress , 2018, Vol. 2, p. 523-530Conference paper (Refereed)
    Abstract [en]

    The problem addressed in this article concerns the development of evolutionary clustering techniques that can be applied to adapt the existing clustering solution to a clustering of newly collected data elements. We are interested in clustering approaches that are specially suited for adapting clustering solutions in the expertise retrieval domain. This interest is inspired by practical applications such as expertise retrieval systems where the information available in the system database is periodically updated by extracting new data. The experts available in the system database are usually partitioned into a number of disjoint subject categories. It is becoming impractical to re-cluster this large volume of available information. Therefore, the objective is to update the existing expert partitioning by the clustering produced on the newly extracted experts. Three different evolutionary clustering techniques are considered to be suitable for this scenario. The proposed techniques are initially evaluated by applying the algorithms on data extracted from the PubMed repository. Copyright © 2018 by SCITEPRESS – Science and Technology Publications, Lda. All rights reserved.

  • 4. Boeva, Veselka
    et al.
    Angelova, Milena
    Technical University Sofia Branch Plovdiv, BUL.
    Tsiporkova, Elena
    Sirris, Brussels, BEL.
    A split-merge evolutionary clustering algorithm2019In: ICAART 2019 - Proceedings of the 11th International Conference on Agents and Artificial Intelligence, SciTePress , 2019, Vol. 2, p. 337-346Conference paper (Refereed)
    Abstract [en]

    In this article we propose a bipartite correlation clustering technique that can be used to adapt the existing clustering solution to a clustering of newly collected data elements. The proposed technique is supposed to provide the flexibility to compute clusters on a new portion of data collected over a defined time period and to update the existing clustering solution by the computed new one. Such an updating clustering should better reflect the current characteristics of the data by being able to examine clusters occurring in the considered time period and eventually capture interesting trends in the area. For example, some clusters will be updated by merging with ones from newly constructed clustering while others will be transformed by splitting their elements among several new clusters. The proposed clustering algorithm, entitled Split-Merge Evolutionary Clustering, is evaluated and compared to another bipartite correlation clustering technique (PivotBiCluster) on two different case studies: expertise retrieval and patient profiling in healthcare. Copyright © 2019 by SCITEPRESS - Science and Technology Publications, Lda. All rights reserved

  • 5.
    Boeva, Veselka
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Lundberg, Lars
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Angelova, Milena
    TU of Sofia, BUL.
    Kohstall, Jan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Cluster Validation Measures for Label Noise Filtering2018In: 9th International Conference on Intelligent Systems 2018: Theory, Research and Innovation in Applications, IS 2018 - Proceedings / [ed] JardimGoncalves, R; Mendonca, JP; Jotsov, V; Marques, M; Martins, J; Bierwolf, R, Institute of Electrical and Electronics Engineers Inc. , 2018, p. 109-116Conference paper (Refereed)
    Abstract [en]

    Cluster validation measures are designed to find the partitioning that best fits the underlying data. In this paper, we show that these well-known and scientifically proven validation measures can also be used in a different context, i.e., for filtering mislabeled instances or class outliers prior to training in super-vised learning problems. A technique, entitled CVI-based Outlier Filtering, is proposed in which mislabeled instances are identified and eliminated from the training set, and a classification hypothesis is then built from the set of remaining instances. The proposed approach assigns each instance several cluster validation scores representing its potential of being an outlier with respect to the clustering properties the used validation measures assess. We examine CVI-based Outlier Filtering and compare it against the LOF detection method on ten data sets from the UCI data repository using five well-known learning algorithms and three different cluster validation indices. In addition, we study two approaches for filtering mislabeled instances: local and global. Our results show that for most learning algorithms and data sets, the proposed CVI-based outlier filtering algorithm outperforms the baseline method (LOF). The greatest increase in classification accuracy has been achieved by combining at least two of the used cluster validation indices and global filtering of mislabeled instances. © 2018 IEEE.

  • 6.
    Boeva, Veselka
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering. Blekinge Inst Technol, Comp Sci & Engn Dept, Karlskrona, Sweden..
    Lundberg, Lars
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering. Blekinge Inst Technol, Comp Sci & Engn Dept, Karlskrona, Sweden..
    Kota, Sai M. Harsha
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Sköld, Lars
    Telenor , SWE.
    Analysis of Organizational Structure through Cluster Validation Techniques Evaluation of email communications at an organizational level2017In: 2017 17TH IEEE INTERNATIONAL CONFERENCE ON DATA MINING WORKSHOPS (ICDMW 2017) / [ed] Gottumukkala, R Ning, X Dong, G Raghavan, V Aluru, S Karypis, G Miele, L Wu, X, IEEE , 2017, p. 170-176Conference paper (Refereed)
    Abstract [en]

    In this work, we report an ongoing study that aims to apply cluster validation measures for analyzing email communications at an organizational level of a company. This analysis can be used to evaluate the company structure and to produce further recommendations for structural improvements. Our initial evaluations, based on data in the forms of emails logs and organizational structure for a large European telecommunication company, show that cluster validation techniques can be useful tools for assessing the organizational structure using objective analysis of internal email communications, and for simulating and studying different reorganization scenarios.

  • 7.
    Boldt, Martin
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Borg, Anton
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Multi-expert estimations of burglars' risk exposure and level of pre-crime preparation using coded crime scene data: Work in progress2018In: Proceedings - 2018 European Intelligence and Security Informatics Conference, EISIC 2018 / [ed] Brynielsson, J, Institute of Electrical and Electronics Engineers Inc. , 2018, p. 77-80Conference paper (Refereed)
    Abstract [en]

    Law enforcement agencies strive to link crimes perpetrated by the same offenders into crime series in order to improve investigation efficiency. Such crime linkage can be done using both physical traces (e.g., DNA or fingerprints) or 'soft evidence' in the form of offenders' modus operandi (MO), i.e. their behaviors during crimes. However, physical traces are only present for a fraction of crimes, unlike behavioral evidence. This work-in-progress paper presents a method for aggregating multiple criminal profilers' ratings of offenders' behavioral characteristics based on feature-rich crime scene descriptions. The method calculates consensus ratings from individual experts' ratings, which then are used as a basis for classification algorithms. The classification algorithms can automatically generalize offenders' behavioral characteristics from cues in the crime scene data. Models trained on the consensus rating are evaluated against models trained on individual profiler's ratings. Thus, whether the consensus model shows improved performance over individual models. © 2018 IEEE.

  • 8.
    Borg, Anton
    et al.
    Blekinge Institute of Technology, School of Computing.
    Lavesson, Niklas
    Blekinge Institute of Technology, School of Computing.
    Boeva, Veselka
    Comparison of clustering approaches for gene expression data2013In: Frontiers in Artificial Intelligence and Applications, IOS Press , 2013, Vol. 257, p. 55-64Conference paper (Refereed)
    Abstract [en]

    Clustering algorithms have been used to divide genes into groups according to the degree of their expression similarity. Such a grouping may suggest that the respective genes are correlated and/or co-regulated, and subsequently indicates that the genes could possibly share a common biological role. In this paper, four clustering algorithms are investigated: k-means, cut-clustering, spectral and expectation-maximization. The algorithms are benchmarked against each other. The performance of the four clustering algorithms is studied on time series expression data using Dynamic TimeWarping distance in order to measure similarity between gene expression profiles. Four different cluster validation measures are used to evaluate the clustering algorithms: Connectivity and Silhouette Index for estimating the quality of clusters, Jaccard Index for evaluating the stability of a cluster method and Rand Index for assessing the accuracy. The obtained results are analyzed by Friedman's test and the Nemenyi post-hoc test. K-means is demonstrated to be significantly better than the spectral clustering algorithm under the Silhouette and Rand validation indices.

  • 9.
    García Martín, Eva
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Casalicchio, Emiliano
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Hoeffding Trees with nmin adaptationManuscript (preprint) (Other academic)
    Abstract [en]

    Machine learning software accounts for a significant amount of energy consumed in data centers. These algorithms are usually optimized towards predictive performance, i.e. accuracy, and scalability. This is the case of data stream mining algorithms. Although these algorithms are adaptive to the incoming data, they have fixed parameters from the beginning of the execution, which lead to energy hotspots. We present dynamic parameter adaptation for data stream mining algorithms to trade-off energy efficiency against accuracy during runtime. To validate this approach, we introduce the nmin adaptation method to improve parameter adaptation in Hoeffding trees. This method dynamically adapts the number of instances needed to make a split (nmin) and thereby reduces the overall energy consumption. We created an experiment to compare the Very Fast Decision Tree algorithm (VFDT, original Hoeffding tree algorithm) with nmin adaptation and the standard VFDT. The results show that VFDT with nmin adaptation consumes up to 89% less energy than the standard VFDT, trading off a few percent of accuracy. Our approach can be used to trade off energy consumption with predictive and computational performance in the strive towards resource-aware machine learning. 

  • 10.
    García Martín, Eva
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Casalicchio, Emiliano
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Hoeffding Trees with nmin adaptation2018In: The 5th IEEE International Conference on Data Science and Advanced Analytics (DSAA 2018), IEEE, 2018, p. 70-79Conference paper (Refereed)
    Abstract [en]

    Machine learning software accounts for a significant amount of energy consumed in data centers. These algorithms are usually optimized towards predictive performance, i.e. accuracy, and scalability. This is the case of data stream mining algorithms. Although these algorithms are adaptive to the incoming data, they have fixed parameters from the beginning of the execution. We have observed that having fixed parameters lead to unnecessary computations, thus making the algorithm energy inefficient.In this paper we present the nmin adaptation method for Hoeffding trees. This method adapts the value of the nmin pa- rameter, which significantly affects the energy consumption of the algorithm. The method reduces unnecessary computations and memory accesses, thus reducing the energy, while the accuracy is only marginally affected. We experimentally compared VFDT (Very Fast Decision Tree, the first Hoeffding tree algorithm) and CVFDT (Concept-adapting VFDT) with the VFDT-nmin (VFDT with nmin adaptation). The results show that VFDT-nmin consumes up to 27% less energy than the standard VFDT, and up to 92% less energy than CVFDT, trading off a few percent of accuracy in a few datasets.

  • 11.
    García Martín, Eva
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Casalicchio, Emiliano
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    How to Measure Energy Consumption in Machine Learning Algorithms2019In: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): ECMLPKDD 2018: European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases Workshops. Lecture Notes in Computer Science. Springer, Cham, 2019, Vol. 11329, p. 243-255Conference paper (Refereed)
    Abstract [en]

    Machine learning algorithms are responsible for a significant amount of computations. These computations are increasing with the advancements in different machine learning fields. For example, fields such as deep learning require algorithms to run during weeks consuming vast amounts of energy. While there is a trend in optimizing machine learning algorithms for performance and energy consumption, still there is little knowledge on how to estimate an algorithm’s energy consumption. Currently, a straightforward cross-platform approach to estimate energy consumption for different types of algorithms does not exist. For that reason, well-known researchers in computer architecture have published extensive works on approaches to estimate the energy consumption. This study presents a survey of methods to estimate energy consumption, and maps them to specific machine learning scenarios. Finally, we illustrate our mapping suggestions with a case study, where we measure energy consumption in a big data stream mining scenario. Our ultimate goal is to bridge the current gap that exists to estimate energy consumption in machine learning scenarios.

  • 12.
    Klotins, Eriks
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Software Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Wnuk, Krzysztof
    Blekinge Institute of Technology, Faculty of Computing, Department of Software Engineering.
    Unterkalmsteiner, Michael
    Blekinge Institute of Technology, Faculty of Computing, Department of Software Engineering.
    Gorschek, Tony
    Blekinge Institute of Technology, Faculty of Computing, Department of Software Engineering.
    A collaborative method for identification and prioritization of data sources in MDREManuscript (preprint) (Other academic)
    Abstract [en]

    Requirements engineering (RE) literature acknowledges the importance of stakeholder identification early in the software engineering activities. However, literature overlooks the challenge of identifying and selecting the right stakeholders and the potential of using other inanimate requirements sources for RE activities for market-driven products.

    Market-driven products are influenced by a large number of stakeholders. Consulting all stakeholders directly is impractical, and companies utilize indirect data sources, e.g. documents and representatives of larger groups of stakeholders. However, without a systematic approach, companies often use easy to access or hard to ignore data sources for RE activities. As a consequence, companies waste resources on collecting irrelevant data or develop the product based on the input from a few sources, thus missing market opportunities.

    We propose a collaborative and structured method to support analysts in the identification and selection of the most relevant data sources for market-driven product engineering. The method consists of four steps and aims to build consensus between different perspectives in an organization and facilitates the identification of most relevant data sources. We demonstrate the use of the method with two industrial case studies.

    Our results show that the method can support market-driven requirements engineering in two ways: (1) by providing systematic steps to identify and prioritize data sources for RE, and (2) by highlighting and resolving discrepancies between different perspectives in an organization.

  • 13.
    Lundberg, Lars
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Lennerstad, Håkan
    Blekinge Institute of Technology, Faculty of Engineering, Department of Mathematics and Natural Sciences.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    García Martín, Eva
    Handling non-linear relations in support vector machines through hyperplane folding2019In: ACM International Conference Proceeding Series, Association for Computing Machinery , 2019, p. 137-141Conference paper (Refereed)
    Abstract [en]

    We present a new method, called hyperplane folding, that increases the margin in Support Vector Machines (SVMs). Based on the location of the support vectors, the method splits the dataset into two parts, rotates one part of the dataset and then merges the two parts again. This procedure increases the margin as long as the margin is smaller than half of the shortest distance between any pair of data points from the two different classes. We provide an algorithm for the general case with n-dimensional data points. A small experiment with three folding iterations on 3-dimensional data points with non-linear relations shows that the margin does indeed increase and that the accuracy improves with a larger margin. The method can use any standard SVM implementation plus some basic manipulation of the data points, i.e., splitting, rotating and merging. Hyperplane folding also increases the interpretability of the data. © 2019 Association for Computing Machinery.

  • 14.
    Nordahl, Christian
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Netz Persson, Marie
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Monitoring Household Electricity Consumption Behaviour for Mining Changes2019Conference paper (Refereed)
    Abstract [en]

    In this paper, we present an ongoing work on using a household electricity consumption behavior model for recognizing changes in sleep patterns. The work is inspired by recent studies in neuroscience revealing an association between dementia and sleep disorders and more particularly, supporting the hypothesis that insomnia may be a predictor for dementia in older adults. Our approach initially creates a clustering model of normal electricity consumption behavior of the household by using historical data. Then we build a new clustering model on a new set of electricity consumption data collected over a predefined time period and compare the existing model with the built new electricity consumption behavior model. If a discrepancy between the two clustering models is discovered a further analysis of the current electricity consumption behavior is conducted in order to investigate whether this discrepancy is associated with alterations in the resident’s sleep patterns. The approach is studied and initially evaluated on electricity consumption data collected from a single randomly selected anonymous household. The obtained results show that our approach is robust to mining changes in the resident daily routines by monitoring and analyzing their electricity consumption behavior model.

  • 15.
    Nordahl, Christian
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Netz Persson, Marie
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science.
    Profiling of household residents’ electricity consumption behavior using clustering analysis2019In: Lect. Notes Comput. Sci., Springer Verlag , 2019, p. 779-786Conference paper (Refereed)
    Abstract [en]

    In this study we apply clustering techniques for analyzing and understanding households’ electricity consumption data. The knowledge extracted by this analysis is used to create a model of normal electricity consumption behavior for each particular household. Initially, the household’s electricity consumption data are partitioned into a number of clusters with similar daily electricity consumption profiles. The centroids of the generated clusters can be considered as representative signatures of a household’s electricity consumption behavior. The proposed approach is evaluated by conducting a number of experiments on electricity consumption data of ten selected households. The obtained results show that the proposed approach is suitable for data organizing and understanding, and can be applied for modeling electricity consumption behavior on a household level. © Springer Nature Switzerland AG 2019.

  • 16.
    Nordahl, Christian
    et al.
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Grahn, Håkan
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Persson, Marie
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Organizing, Visualizing and Understanding Households Electricity Consumption Data through Clustering Analysis.2018In: Organizing, Visualizing and Understanding Households Electricity Consumption Data through Clustering Analysis, https://sites.google.com/view/arial2018/accepted-papersprogram , 2018Conference paper (Refereed)
    Abstract [en]

    We propose a cluster analysis approach for organizing, visualizing and understanding households’ electricity consumption data. We initially partition the consumption data into a number of clusters with similar daily electricity consumption profiles. The centroids of each cluster can be seen as representative signatures of a household’s electricity consumption behaviors. We evaluate the proposed approach by conducting a number of experiments on electricity consumption data of ten selected households. Our results show that the approach is suitable for data analysis, understanding and creating electricity consumption behavior models.

  • 17. Shao, Borong
    et al.
    Lavesson, Niklas
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Boeva, Veselka
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    Shahzad, Raja Khurram
    Blekinge Institute of Technology, Faculty of Computing, Department of Computer Science and Engineering.
    A mixture-of-experts approach for gene regulatory network inference2016In: INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, ISSN 1748-5673, Vol. 14, no 3, p. 258-275Article in journal (Refereed)
    Abstract [en]

    Gene regulatory network (GRN) inference is an important problem in bioinformatics. Many machine learning methods have been applied to increase the inference accuracy. Ensemble learning methods are shown in DREAM3 and DREAM5 challenges to yield a higher inference accuracy than individual algorithms. However, no ensemble method has been proposed to take advantage of the complementarity among existing algorithms from the perspective of network motifs. We propose an ensemble method based on the principle of Mixture-of-Experts ensemble learning. The method can quantitatively evaluate the accuracy of individual algorithms on predicting each type of the network motifs and assign weights to the algorithms accordingly. The individual predictions are then used to generate the ensemble prediction. By performing controlled experiments and statistical tests, the proposed ensemble method is shown to yield a significantly higher accuracy than the generic average ranking method used in the DREAM5 challenge. In addition, a new type of network motif is found in GRN, the inclusion of which can increase the accuracy of the proposed method significantly.

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